Papers published in Journals (C. del Val)

Number of Results: 37

Jump to Year: 2017, 2015, 2014, 2013, 2012, 2010, 2009, 2008, 2007, 2006, 2005, 2004, 2003, 2002, 1999

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2017 (1)

• [2274] C. del Val, Bondar AN. Charged groups at binding interfaces of the PsbO subunit of photosystem II: A combined bioinformatics and simulation study. Journal: Biochimica et Biophysica Acta (BBA) - Bioenergetics. 2017 Jun;1858(6):432-441. doi: 10.1016/j.bbabio.2017.03.004
  

2015 (4)

• [2264] J. Arnedo, DM. Svrakic , C. del Val, R. Romero Zaliz, H. Hernández-Cuervo; Molecular Genetics of Schizophrenia Consortium., AH. Fanous, MT. Pato, CN. Pato, GA. de Erausquin, CR. Cloninger, I. Zwir. Uncovering the hidden risk architecture of the schizophrenias: confirmation in three independent genome-wide association studies. Journal: American Journal of Psychiatry. 2015 Feb 1;172(2):139-53. doi: 10.1176/appi.ajp.2014.14040435
  
• [2266] Das A, V. Bellofatto, J. Rosenfeld, M. Carrington , R. Romero Zaliz, C. del Val, AM. Estévez. High throughput sequencing analysis of Trypanosoma brucei DRBD3/PTB1-bound mRNAs. Journal:Molecular and Biochemical Parasitology. 2015 Jan-Feb;199(1-2):1-4. doi: 10.1016/j.molbiopara.2015.02.003
  
• [2269] Cournia,TW.Allen, I. Andricioaei, B.Antonny, D. Baum, G. Brannigan,NV.Buchete,JT. Deckman, L.Delemotte,C. del Val,R. Friedman, P.Gkeka,HC. Hege, J. Hénin,MA. Kasimova,A. Kolocouris,ML. Klein,S. Khalid. Membrane Protein Structure, Function, and Dynamics: a Perspective from Experiments and Theory. Journal:Journal of Membrane Biology. 2015 Aug;248(4):611-40. doi: 10.1007/s00232-015-9802-0
  
• [2272] DC. Garcia-Ramon, MJ. Luque-Navas, CA. Molina, C. del Val, A: Osuna, S. Vilchez. Identification, sequencing and comparative analysis of pBp15.S plasmid from the newly described entomopathogen Bacillus pumilus 15.1. Journal:Plasmid. 2015 Nov;82:17-27. doi: 10.1016/j.plasmid.2015.09.001
  

2014 (2)

• [2259] C. del Val, Bondar L. Bondar AN. Coupling between inter-helical hydrogen bonding and water dynamics in a proton transporter.. Journal:Journal of Structural Biology 2014 Apr;186(1):95-111. doi: 10.1016/j.jsb.2014.02.010
  
• [2262] J. Arnedo, R. Romero Zaliz, I. Zwir, C. del Val. A multiobjective method for robust identification of bacterial small non-coding RNAs. Bioinformatics. 2014 Oct 15;30(20):2875-82. doi: 10.1093/bioinformatics/btu398
  

2013 (2)

• [1692] J. Arnedo, C. del Val, G.A. de Erausquin, R. Romero Zaliz, D. Svrakic, C.R. Cloninger, I. Zwir. PGMRA: a web server for (phenotype × genotype) many-to-many relation analysis in GWAS. Nucleic Acids Research 41:W1 (2013) W142-W149. doi: 10.1093/nar/gkt496
  
• [1717] C. del Val, J. Royuela-Flor, S. Milenkovic, AN. Bondar. Channelrhodopsins: A bioinformatics perspective. Biochim Biophys Acta (2013) pii: S0005-2728(13)00190-4. doi: 10.1016/j.bbabio.2013.11.005
  

2012 (3)

• [1473] C. del Val, R. Romero Zaliz,O. Torres-Quesada, A. Peregrina, N. Toro, J.I. Jimenez-Zurdo. A survey of sRNA families in α-proteobacteria. RNA Biology 9:2 (2012) 119-129. doi: 10.4161/rna.18643
  
• [1568] C. del Val, S. White, A. N. Bondar. Ser/Thr motifs in transmembrane proteins:Conservation patterns and effects on local protein structure and dynamics. Journal of Membrane Biology, 245 (2012) 717-730. doi: 10.1007/s00232-012-9452-4
  
• [1569] M. Nack, I. Radu, B. J. Schultz, T. Resler, R. Schlesinger, A. N. Bondar, C. del Val, S. Abbruzzetti, C. Viappiani, C. Bamann, E. Bamberg, J. Heberle. Kinetics of proton release and uptake by channelrhodopsin-2. FEBS Letters 586 (2012) 1344–1348. doi: 10.1016/j.febslet.2012.03.047
  

2010 (5)

• [1170] C. del Val, O. Pelz, K.H. Glatting, E. Barta and A. Hotz-Wagenblatt. PromoterSweep: a tool for identification of transcription factor binding sites. Theoretical Chemical Accounts 125 (2010) 583-591. doi: 10.1007/s00214-009-0643-8
  
• [1171] J. Soza-Ried, A.Hotz-Wagenblatt, KH. Glatting, C. del Val, K. Fellenberg, H. Bode, U. Frank, J. Hoheisel, M. Frohme. The transcriptome of the colonial marine hydroid Hydractinia echinata. FEBS Journal FEBS J. 2010 Jan;277(1):197-209.
  
• [1172] R. Romero Zaliz, C. Rubio-Escudero, I. Zwir, C. del Val. Optimization of Multi-classifiers for Computational Biology: Application to gene finding and gene expression. Theoretical Chemical Accounts, 125(3-6), 599-611. doi: 10.1007/s00214-009-0648-3
  
• [1173] S. Kogenaru, C. del Val, A. Hotz-Wagenblatt, K-H Glatting. TissueDistributionDBs: a repository of organism-specific tissue-distribution profiles. Theoretical Chemical Accounts. doi: 10.1007/s00214-009-0670-5
  
• [1353] Bondar AN, C. del Val, Freites JA, Tobias DJ, White SH. Dynamics of SecY translocons with translocation-defective mutations. Structure 2010 18(7):847-57.
  

2009 (3)

• [1166] C. Previti, O. Harari, I. Zwir, C. del Val. Profile analysis and prediction of tissue-specific CPG island methylation classes. BMC Bioinformatics 10:116 (2009). doi: 10.1186/1471-2105-10-116
  
• [1167] N. Bondar, C. del Val, S. H. White. Rhomboid protease dynamics and lipid interactions. Structure 17:3 (2009) 395-405. doi: 10.1016/j.str.2008.12.017
  
• [1169] O. Harari, C. del Val, R. Romero Zaliz, D. Shin, H. Huang, E. A. Groisman, I. Zwir. Identifying promoter features of co-regulated genes with similar network motifs. BMC Bioinformatics 10:4-S1. doi: 10.1186/1471-2105-10-S4-S1
  

2008 (2)

• [0852] R. Romero Zaliz, C. del Val, J.P. Cobb, I. Zwir. Onto-CC: a web server for identifying Gene Ontology conceptual clusters. Nucleid Acids Research, 36(Web Server issue):W352-W357. doi: 10.1093/nar/gkn323
  
• [0895] A. Vivas, B. Moreno, C. del Val, C. Macci, G. Masciandaro, E. Benitez. Metabolic and bacterial diversity in soils historically contaminated by heavy metals and hydrocarbons. Journal of Environmental Monitoring 10:11 (2008) 1287-1296. doi: 10.1039/b808567f
  

2007 (2)

• [0757] C. del Val, E. Rivas,Omar Torres-Quesada, Nicolás Toro and José I. Jiménez-Zurdo. Identification of differentially expressed small non-coding RNAs in the legume endosymbiont Sinorhizobium meliloti by comparative genomics. Molecular Microbiology 66:5 (2007) 1080–1091. doi: 10.1111/j.1365-2958.2007.05978.x
  
• [0670] C. del Val, P. Ernst , M. Falkenhahn, C. Fladerer, K.H. Glatting, S. Suhai, A. Hotz-Wagenblatt. ProtSweep, 2Dsweep and DomainSweep: protein analysis suite at DKFZ. Nucleic Acids Research (2007) 35(Web Server issue):W444-W450;. doi: 10.1093/nar/gkm364
  

2006 (5)

• [0505] A. Mehrle, H. Rosenfelder, I. Schupp, C. del Val, D. Arlt, F. Hahne, S. Bechtel, J. Simpson, O. Hofman, W. Hide , K.-H. Glatting, W. Huber, R. Pepperkok, A. Poustka, S. Wiemann. The LIFEdb database in 2006. Nucleic Acid Research Database Issue 34 (2006) D415-D418. doi: 10.1093/nar/gkj139
  
• [0582] A. Vinayagam, C. del Val, R. König, K.-H. Glatting, R. Eils. GOPET: a tool for automatic Gene Ontology term prediction. BMC BIoinformatics 7 (2006) 161-167. doi: 10.1186/1471-2105-7-161
  
• [0600] C. del Val, V.Y. Kuryshev, K.H. Glatting, P. Ernst, A. Hotz-Wagenblatt, A. Poustka, S. Suhai, S. Wiemann. CAFTAN: a tool for fast mapping, and quality assessment of cDNAs. BMC Bioinformatics 7 (2006) 473-487. doi: 10.1186/1471-2105-7-473
  
• [0601] F.A. Giordano, B. Fehse, A. Hotz-Wagenblatt, S. Jonnakuty, C. del Val, J.U. Appelt, K.Z. Nagy, K. Kuehlcke, S. Naundorf, A.R. Zander, W.J. Zeller, A.D. Ho, S. Fruehauf, S. Laufs. Retroviral vector insertions in T-lymphocytes used for suicide gene therapy occur in gene groups with specific molecular functions. Bone Marrow Transplantation 38:3 (2006) 229-235. doi: 10.1038/sj.bmt.1705424
  
• [0602] S. Laufs, G. Guenechea, A. Gonzalez-Murillo, K.Z. Nagy, M.L. Lozano, C. del Val, S. Jonnakuty, A. Hotz-Wagenblatt, W.J. Zeller, J.A. Bueren et al. Lentiviral vector integration sites in human NOD/SCID repopulating cells. Journal of Gene Medicine 8(10) (2006) 1197-1207. doi: 10.1002/jgm.958
  

2005 (1)

• [0626] D. Hose , J.F. Rossi, C. Ittrich , J. De Vos , T. Reme, A. Benner, K.N. Mahtouk, C. del Val, J. Moreaux, A. Hotz-Wagenblatt. Molecular classification of multiple myeloma (MM) based on gene expression profiling (GEP) and fluorescence in situ hybridisation (FISH) is an independent predictor for event free survival (EFS). Blood 2005, 106(11):151A-152A..
  

2004 (2)

• [0480] C. del Val, A. Mehrle, M. Falkenhahn, M. Séller, KH Glatting, A. Poustka, S. Suhai, S. Wiemann. High-troughput protein analysis integrating bioinformatics and experimental assays. Nucleic Acid Research 32:2 (2004) 742-748. doi: 10.1093/nar/gkh257
  
• [0628] F.W. Cremer, J. De Vos, D. Hose, J.F. Rossi, C. Ittrich, T. Reme, A. Benner, E. Jourdan, M.S. Raab, J. Bila, C. del Val. Multiple myeloma: Global expression profiling (GEP) indicates upregulation of the ribosomal machinery in hyperdiploid clones. Blood 2004, 104(11):398A-398A.
  

2003 (1)

• [0481] C. del Val, K-H Glatting, P. Ernst, S. Suhai. cDNA2Genome a tool for the mapping and annotation of cDNAs. BMC Bioinformatics 4:39 (2003) 1-8.
  

2002 (1)

• [0482] C. del Val, P. Ernst, R. Bräuning, K-H Glatting, S. Suhai. PATH: a task for the inference of phylogenies. Bioinformatics 18 (2002) 646-647.
  

1999 (3)

• [0484] C. del Val, J.M. Barea, C. Azcón-Aguilar. Diversity of Arbuscular Mycorrhizal Fungal populations in heavy metal contaminated soils. Applied Environmental Microbiology 65 (1999) 718-723.
  
• [0485] C. del Val, J.M. Barea, C. Azcón-Aguilar. Assessing the tolerance to heavy metals of arbuscular mycorrhizal fungi isolated from sewage-sludge contaminated soils. Applied Soil Ecology 11 (1999) 261- 269.
  
• [0486] J.M. Barea, E. Pérez Solis, C. del Val, C. Azcón-Aguilar. Importancia de las micorrizas en el establecimiento y protección de las plantas en suelos degradados. Phytoma 111 (1999) 18-30.